PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.159
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 377aa    MW: 41026.2 Da    PI: 9.9433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.159genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31304361359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  evm.model.supercontig_21.159 304 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPMMLIVTYEGDHNHT 361
                                   99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-17255300IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-33290363IPR003657WRKY domain
PROSITE profilePS5081131.605297363IPR003657WRKY domain
SuperFamilySSF1182907.32E-27300363IPR003657WRKY domain
SMARTSM007741.0E-37302362IPR003657WRKY domain
PfamPF031061.5E-26304360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAVELMMGYG GDSFAAASPA RMDENALREA ASAGIQGVEE VIRLLSQSQP RDKQQLYQES  60
SPSSSLSPPP AVEIKAVADV AVNNFKKMIS LLGRSRTGHA RFRRAPAVQI HPQQQPEQQQ  120
QSQPKFQTQS NHQDPGPSVS VPSATYHQTT EQGSAFRVYC PTPLHRLPPL PHNHHHNKSN  180
PHLGVTKSGF VERNDAHGTI NFSPSPSISA ATSFMSSLTG ETDSIQRSLS SGFQFTNPSH  240
VASSGKPPLS CSSLKRKCSS MDDAALKCGS SSSRCHCSKK RKSRVKRVIR VPAISNKMAD  300
IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERALDDPMML IVTYEGDHNH  360
TQPAAEMPAA IVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22290363274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017155.11e-171WRKY DNA-binding protein 7
SwissprotQ9STX01e-129WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A140H8K51e-171A0A140H8K5_MANES; WRKY transcription factor 1
STRINGPOPTR_0002s12480.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-92WRKY DNA-binding protein 7